Coexpression cluster: Cluster_125 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0008168 methyltransferase activity 6.41% (5/78) 3.44 9.9e-05 0.004811
GO:0016741 transferase activity, transferring one-carbon groups 6.41% (5/78) 3.33 0.00014 0.005104
GO:0008173 RNA methyltransferase activity 3.85% (3/78) 5.09 8.8e-05 0.006447
GO:0016070 RNA metabolic process 7.69% (6/78) 2.7 0.000324 0.007878
GO:0008175 tRNA methyltransferase activity 2.56% (2/78) 7.24 5.7e-05 0.008335
GO:0008033 tRNA processing 3.85% (3/78) 4.51 0.000305 0.008898
GO:0009451 RNA modification 3.85% (3/78) 4.24 0.000526 0.009596
GO:0003723 RNA binding 6.41% (5/78) 2.95 0.000474 0.009881
GO:0006396 RNA processing 5.13% (4/78) 3.21 0.000913 0.014816
GO:0034470 ncRNA processing 3.85% (3/78) 3.77 0.001381 0.016803
GO:0140098 catalytic activity, acting on RNA 5.13% (4/78) 3.09 0.001266 0.016809
GO:0140101 catalytic activity, acting on a tRNA 3.85% (3/78) 3.71 0.001547 0.017379
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 2.56% (2/78) 5.24 0.001224 0.017871
GO:0003676 nucleic acid binding 11.54% (9/78) 1.7 0.00178 0.018562
GO:0090304 nucleic acid metabolic process 7.69% (6/78) 2.19 0.002026 0.01972
GO:0006399 tRNA metabolic process 3.85% (3/78) 3.51 0.002337 0.021321
GO:0009982 pseudouridine synthase activity 2.56% (2/78) 4.74 0.002487 0.021355
GO:0016853 isomerase activity 3.85% (3/78) 3.19 0.004398 0.02792
GO:0001522 pseudouridine synthesis 2.56% (2/78) 4.51 0.003444 0.027938
GO:0016429 tRNA (adenine-N1-)-methyltransferase activity 1.28% (1/78) 7.83 0.004397 0.029177
GO:0004749 ribose phosphate diphosphokinase activity 1.28% (1/78) 7.83 0.004397 0.029177
GO:0016426 tRNA (adenine) methyltransferase activity 1.28% (1/78) 7.83 0.004397 0.029177
GO:0016866 intramolecular transferase activity 2.56% (2/78) 4.37 0.004164 0.031996
GO:0034660 ncRNA metabolic process 3.85% (3/78) 3.09 0.005268 0.03205
GO:0006139 nucleobase-containing compound metabolic process 8.97% (7/78) 1.7 0.005798 0.03386
GO:0046483 heterocycle metabolic process 8.97% (7/78) 1.57 0.009105 0.040283
GO:0006725 cellular aromatic compound metabolic process 8.97% (7/78) 1.58 0.008843 0.040348
GO:0030488 tRNA methylation 1.28% (1/78) 6.83 0.008774 0.041323
GO:0034708 methyltransferase complex 1.28% (1/78) 6.83 0.008774 0.041323
GO:0031515 tRNA (m1A) methyltransferase complex 1.28% (1/78) 6.83 0.008774 0.041323
GO:0043527 tRNA methyltransferase complex 1.28% (1/78) 6.83 0.008774 0.041323
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 1.28% (1/78) 6.83 0.008774 0.041323
GO:0016423 tRNA (guanine) methyltransferase activity 1.28% (1/78) 6.83 0.008774 0.041323
GO:1901360 organic cyclic compound metabolic process 8.97% (7/78) 1.54 0.010306 0.044254
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Amborella trichopoda HCCA Cluster_96 0.027 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_170 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_186 0.021 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_228 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_7 0.047 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_31 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_132 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_199 0.032 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_243 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_157 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_49 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_80 0.024 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_145 0.032 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_171 0.028 Archaeplastida Compare
Gingko biloba HCCA Cluster_167 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_17 0.02 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_64 0.052 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_132 0.039 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_159 0.022 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_165 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_210 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_311 0.019 Archaeplastida Compare
Oryza sativa HCCA Cluster_312 0.03 Archaeplastida Compare
Oryza sativa HCCA Cluster_320 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_203 0.045 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_207 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_229 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_275 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_277 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_40 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_237 0.03 Archaeplastida Compare
Picea abies HCCA Cluster_276 0.02 Archaeplastida Compare
Picea abies HCCA Cluster_483 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_37 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_71 0.046 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_170 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_200 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_14 0.025 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_29 0.032 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_119 0.035 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_197 0.05 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_277 0.026 Archaeplastida Compare
Vitis vinifera HCCA Cluster_3 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_39 0.019 Archaeplastida Compare
Vitis vinifera HCCA Cluster_101 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_159 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_188 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_13 0.025 Archaeplastida Compare
Zea mays HCCA Cluster_20 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_162 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_213 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_318 0.037 Archaeplastida Compare
Sequences (78) (download table)

InterPro Domains

GO Terms

Family Terms