Coexpression cluster: Cluster_120 (HCCA cluster)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044428 nuclear part 7.69% (5/65) 4.86 1e-06 0.000147
GO:0006397 mRNA processing 4.62% (3/65) 5.59 3.1e-05 0.001959
GO:0005488 binding 36.92% (24/65) 1.24 2.4e-05 0.002302
GO:0016071 mRNA metabolic process 4.62% (3/65) 5.15 7.9e-05 0.003767
GO:0044424 intracellular part 13.85% (9/65) 2.01 0.000367 0.010022
GO:0016569 covalent chromatin modification 3.08% (2/65) 6.09 0.000365 0.011615
GO:0016570 histone modification 3.08% (2/65) 6.09 0.000365 0.011615
GO:0044464 cell part 13.85% (9/65) 1.92 0.000562 0.013428
GO:0016070 RNA metabolic process 7.69% (5/65) 2.7 0.001028 0.021827
GO:0032991 protein-containing complex 10.77% (7/65) 2.06 0.001414 0.027017
GO:0006325 chromatin organization 3.08% (2/65) 4.84 0.002171 0.027646
GO:0044422 organelle part 7.69% (5/65) 2.5 0.001889 0.027752
GO:0003676 nucleic acid binding 12.31% (8/65) 1.79 0.002092 0.02854
GO:0044446 intracellular organelle part 7.69% (5/65) 2.51 0.001821 0.028989
GO:0044451 nucleoplasm part 3.08% (2/65) 5.0 0.001735 0.030125
GO:0019219 regulation of nucleobase-containing compound metabolic process 4.62% (3/65) 2.86 0.008252 0.033535
GO:2000112 regulation of cellular macromolecule biosynthetic process 4.62% (3/65) 2.86 0.008252 0.033535
GO:0009889 regulation of biosynthetic process 4.62% (3/65) 2.86 0.008252 0.033535
GO:0031326 regulation of cellular biosynthetic process 4.62% (3/65) 2.86 0.008252 0.033535
GO:0010556 regulation of macromolecule biosynthetic process 4.62% (3/65) 2.86 0.008252 0.033535
GO:0003729 mRNA binding 1.54% (1/65) 6.51 0.010952 0.033739
GO:0022618 ribonucleoprotein complex assembly 1.54% (1/65) 6.51 0.010952 0.033739
GO:0071826 ribonucleoprotein complex subunit organization 1.54% (1/65) 6.51 0.010952 0.033739
GO:0000123 histone acetyltransferase complex 1.54% (1/65) 6.51 0.010952 0.033739
GO:0008023 transcription elongation factor complex 1.54% (1/65) 6.51 0.010952 0.033739
GO:0005681 spliceosomal complex 1.54% (1/65) 6.51 0.010952 0.033739
GO:0009987 cellular process 21.54% (14/65) 0.98 0.009391 0.033844
GO:0043170 macromolecule metabolic process 16.92% (11/65) 1.16 0.009327 0.034259
GO:0031323 regulation of cellular metabolic process 4.62% (3/65) 2.79 0.009287 0.03478
GO:0051171 regulation of nitrogen compound metabolic process 4.62% (3/65) 2.79 0.009287 0.03478
GO:0080090 regulation of primary metabolic process 4.62% (3/65) 2.79 0.009287 0.03478
GO:0010468 regulation of gene expression 4.62% (3/65) 2.82 0.008864 0.035272
GO:0006355 regulation of transcription, DNA-templated 4.62% (3/65) 2.9 0.007666 0.035712
GO:0008270 zinc ion binding 4.62% (3/65) 2.9 0.007666 0.035712
GO:2001141 regulation of RNA biosynthetic process 4.62% (3/65) 2.9 0.007666 0.035712
GO:1903506 regulation of nucleic acid-templated transcription 4.62% (3/65) 2.9 0.007666 0.035712
GO:0051252 regulation of RNA metabolic process 4.62% (3/65) 2.9 0.007666 0.035712
GO:0071840 cellular component organization or biogenesis 4.62% (3/65) 2.88 0.007858 0.035737
GO:0003674 molecular_function 41.54% (27/65) 0.59 0.010637 0.036282
GO:0060255 regulation of macromolecule metabolic process 4.62% (3/65) 2.73 0.010394 0.036764
GO:0005685 U1 snRNP 1.54% (1/65) 8.09 0.003664 0.036831
GO:0000445 THO complex part of transcription export complex 1.54% (1/65) 8.09 0.003664 0.036831
GO:0000347 THO complex 1.54% (1/65) 8.09 0.003664 0.036831
GO:0006376 mRNA splice site selection 1.54% (1/65) 8.09 0.003664 0.036831
GO:0019222 regulation of metabolic process 4.62% (3/65) 2.72 0.010624 0.036895
GO:1990234 transferase complex 3.08% (2/65) 4.39 0.004059 0.038763
GO:0006354 DNA-templated transcription, elongation 1.54% (1/65) 7.09 0.007314 0.038807
GO:0016593 Cdc73/Paf1 complex 1.54% (1/65) 7.09 0.007314 0.038807
GO:0003682 chromatin binding 1.54% (1/65) 7.09 0.007314 0.038807
GO:0030532 small nuclear ribonucleoprotein complex 1.54% (1/65) 7.09 0.007314 0.038807
GO:0098657 import into cell 1.54% (1/65) 7.09 0.007314 0.038807
GO:0006897 endocytosis 1.54% (1/65) 7.09 0.007314 0.038807
GO:0042393 histone binding 1.54% (1/65) 7.09 0.007314 0.038807
GO:0120114 Sm-like protein family complex 1.54% (1/65) 7.09 0.007314 0.038807
GO:0006368 transcription elongation from RNA polymerase II promoter 1.54% (1/65) 7.09 0.007314 0.038807
GO:0097525 spliceosomal snRNP complex 1.54% (1/65) 7.09 0.007314 0.038807
GO:1902493 acetyltransferase complex 1.54% (1/65) 6.09 0.014576 0.041553
GO:0030880 RNA polymerase complex 1.54% (1/65) 6.09 0.014576 0.041553
GO:0031248 protein acetyltransferase complex 1.54% (1/65) 6.09 0.014576 0.041553
GO:1990904 ribonucleoprotein complex 4.62% (3/65) 2.58 0.013888 0.042105
GO:0005575 cellular_component 15.38% (10/65) 1.14 0.014315 0.042722
GO:0032774 RNA biosynthetic process 3.08% (2/65) 3.36 0.016153 0.04537
GO:0016573 histone acetylation 1.54% (1/65) 5.77 0.018187 0.046317
GO:0061695 transferase complex, transferring phosphorus-containing groups 1.54% (1/65) 5.77 0.018187 0.046317
GO:0000375 RNA splicing, via transesterification reactions 1.54% (1/65) 5.77 0.018187 0.046317
GO:0000398 mRNA splicing, via spliceosome 1.54% (1/65) 5.77 0.018187 0.046317
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 1.54% (1/65) 5.77 0.018187 0.046317
GO:0003723 RNA binding 4.62% (3/65) 2.48 0.016746 0.046354
GO:1901363 heterocyclic compound binding 20.0% (13/65) 1.1 0.006443 0.047329
GO:0097159 organic cyclic compound binding 20.0% (13/65) 1.1 0.006443 0.047329
GO:0008150 biological_process 29.23% (19/65) 0.7 0.017428 0.047552
GO:0016043 cellular component organization 4.62% (3/65) 3.05 0.005732 0.049765
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA cluster Cluster_48 0.025 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_93 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_107 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_117 0.015 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_122 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_139 0.03 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_149 0.019 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_152 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_163 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_167 0.014 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_207 0.017 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_215 0.016 Gene family Compare
Arabidopsis thaliana HCCA cluster Cluster_224 0.027 Gene family Compare
Cyanophora paradoxa HCCA cluster Cluster_197 0.014 Gene family Compare
Chlamydomonas reinhardtii HCCA cluster Cluster_158 0.021 Gene family Compare
Oryza sativa HCCA cluster Cluster_65 0.019 Gene family Compare
Oryza sativa HCCA cluster Cluster_148 0.014 Gene family Compare
Oryza sativa HCCA cluster Cluster_173 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_174 0.017 Gene family Compare
Oryza sativa HCCA cluster Cluster_182 0.024 Gene family Compare
Oryza sativa HCCA cluster Cluster_196 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_205 0.015 Gene family Compare
Oryza sativa HCCA cluster Cluster_297 0.016 Gene family Compare
Oryza sativa HCCA cluster Cluster_321 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_68 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_148 0.016 Gene family Compare
Picea abies HCCA cluster Cluster_298 0.014 Gene family Compare
Picea abies HCCA cluster Cluster_461 0.025 Gene family Compare
Selaginella moellendorfii HCCA cluster Cluster_91 0.031 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_59 0.038 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_100 0.016 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_211 0.014 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_217 0.033 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_229 0.034 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_261 0.017 Gene family Compare
Solanum lycopersicum HCCA cluster Cluster_309 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_70 0.044 Gene family Compare
Vitis vinifera HCCA cluster Cluster_72 0.014 Gene family Compare
Vitis vinifera HCCA cluster Cluster_170 0.017 Gene family Compare
Vitis vinifera HCCA cluster Cluster_186 0.015 Gene family Compare
Vitis vinifera HCCA cluster Cluster_189 0.018 Gene family Compare
Vitis vinifera HCCA cluster Cluster_206 0.024 Gene family Compare
Vitis vinifera HCCA cluster Cluster_230 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_1 0.014 Gene family Compare
Zea mays HCCA cluster Cluster_7 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_15 0.027 Gene family Compare
Zea mays HCCA cluster Cluster_74 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_86 0.021 Gene family Compare
Zea mays HCCA cluster Cluster_90 0.016 Gene family Compare
Zea mays HCCA cluster Cluster_110 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_166 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_172 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_178 0.02 Gene family Compare
Zea mays HCCA cluster Cluster_211 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_272 0.018 Gene family Compare
Zea mays HCCA cluster Cluster_281 0.019 Gene family Compare
Zea mays HCCA cluster Cluster_286 0.017 Gene family Compare
Zea mays HCCA cluster Cluster_294 0.022 Gene family Compare
Zea mays HCCA cluster Cluster_322 0.024 Gene family Compare
Zea mays HCCA cluster Cluster_328 0.015 Gene family Compare
Zea mays HCCA cluster Cluster_475 0.014 Gene family Compare
Sequences (65) (download table)

InterPro Domains

GO Terms

Family Terms